DQBM Publications

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ZORA Publication List

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ZORA Publication List

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ZORA Publication List

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ZORA Publication List

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• de la Rosa, Ezequiel; et al; Menze, Bjoern H (2022). Detecting CTP Truncation Artifacts in Acute Stroke Imaging from the Arterial Input and the Vascular Output Functions. medRxiv 22276371, Cold Spring Harbor Laboratory.
• Petzsche, Moritz Roman Hernandez; et al; Kofler, Florian; Ezhov, Ivan; Menze, Bjoern (2022). ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. ArXiv.org 2206.06694, Cornell University.
• Al Boustani, George; Weiß, Lennart Jakob Konstantin; Li, Hongwei; Meyer, Svea Marie; Hiendlmeier, Lukas; Rinklin, Philipp; Menze, Bjoern; Hemmert, Werner; Wolfrum, Bernhard (2022). Influence of Auditory Cues on the Neuronal Response to Naturalistic Visual Stimuli in a Virtual Reality Setting. Frontiers in Human Neuroscience, 16:809293.
• Dieckmeyer, Michael; Löffler, Maximilian Thomas; El Husseini, Malek; Sekuboyina, Anjany; Menze, Bjoern; Sollmann, Nico; Wostrack, Maria; Zimmer, Claus; Baum, Thomas; Kirschke, Jan Stefan (2022). Level-Specific Volumetric BMD Threshold Values for the Prediction of Incident Vertebral Fractures Using Opportunistic QCT: A Case-Control Study. Frontiers in Endocrinology, 13:882163.
• Kofler, Florian; et al; Menze, Bjoern (2022). Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. ArXiv.org 2205.10355, Cornell University.
• Ezhov, Ivan; Mot, Tudor; Shit, Suprosanna; Lipková, Jana; Paetzold, Johannes C; Kofler, Florian; Pellegrini, Chantal; Kollovieh, Marcel; Navarro, Fernando; Li, Hongwei; Metz, Marie; Wiestler, Benedikt; Menze, Bjoern (2022). Geometry-aware neural solver for fast Bayesian calibration of brain tumor models. IEEE Transactions on Medical Imaging, 41(5):1269-1278.
• Xue, Song; Gafita, Andrei; Dong, Chao; Zhao, Yu; Tetteh, Giles; Menze, Bjoern H; Ziegler, Sibylle; Weber, Wolfgang; Afshar-Oromieh, Ali; Rominger, Axel; Eiber, Matthias; Shi, Kuangyu (2022). Proof-of-concept Study to Estimate Individual Post-Therapy Dosimetry in Men with Advanced Prostate Cancer Treated with 177Lu-PSMA I&T Therapy. Research Square 1588151/v1, University of Zurich.
• Finck, Tom; Li, Hongwei; Schlaeger, Sarah; Grundl, Lioba; Sollmann, Nico; Bender, Benjamin; Bürkle, Eva; Zimmer, Claus; Kirschke, Jan; Menze, Björn; Mühlau, Mark; Wiestler, Benedikt (2022). Uncertainty-Aware and Lesion-Specific Image Synthesis in Multiple Sclerosis Magnetic Resonance Imaging: A Multicentric Validation Study. Frontiers in Neuroscience, 16:889808.
• Rühling, Sebastian; Scharr, Andreas; Sollmann, Nico; Wostrack, Maria; Löffler, Maximilian T; Menze, Bjoern; Sekuboyina, Anjany; El Husseini, Malek; Braren, Rickmer; Zimmer, Claus; Kirschke, Jan S (2022). Proposed diagnostic volumetric bone mineral density thresholds for osteoporosis and osteopenia at the cervicothoracic spine in correlation to the lumbar spine. European Radiology, 32(9):6207-6214.
• Pirkl, Carolin M; Cencini, Matteo; Kurzawski, Jan W; Waldmannstetter, Diana; Li, Hongwei; Sekuboyina, Anjany; Endt, Sebastian; Peretti, Luca; Donatelli, Graziella; Pasquariello, Rosa; Costagli, Mauro; Buonincontri, Guido; Tosetti, Michela; Menzel, Marion I; Menze, Bjoern H (2022). Learning residual motion correction for fast and robust 3D multiparametric MRI. Medical Image Analysis, 77:102387.
• Ivantsits, Matthias; Goubergrits, Leonid; Menze, Bjoern; et al (2022). Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge. Medical Image Analysis, 77:102333.
• Kaushik, Sandeep S; Bylun, Mikael; Cozzin, Cristina; Shanbhag, Dattesh; Petit, Steven F; Wyatt, Jonathan J; Menzel, Marion I; Pirkl, Carolin M; Mehta, Bhairav; Chauhan, Vikas; Chandrasekharan, Kesavadas; Jonsson, Jojakim; Nyholm, Tufve; Wiesinger, Florian; Menze, Bjoern H (2022). Region of Interest focused MRI to Synthetic CT Translation using Regression and Classification Multi-task Network. ArXiv.org 2203.16288, Cornell University.
• Shit, Suprosanna; Koner, Rajat; Wittmann, Bastian; Paetzold, Johannes C; Ezhov, Ivan; Li, Hongwei; Pan, Jiazhen; Sharifzadeh, Sahand; Kaissis, Georgios; Tresp, Volker; Menze, Bjoern (2022). Relationformer: A Unified Framework for Image-to-Graph Generation. ArXiv.org 10202, Cornell University.
• Thomas, Marie Franziska; Kofler, Florian; Grundl, Lioba; Finck, Tom; Li, Hongwei; Zimmer, Claus; Menze, Björn; Wiestler, Benedikt (2022). Improving Automated Glioma Segmentation in Routine Clinical Use Through Artificial Intelligence-Based Replacement of Missing Sequences With Synthetic Magnetic Resonance Imaging Scans. Investigative Radiology, 57(3):187-193.
• Navarro, Fernando; Sasahara, Guido; Shit, Suprosanna; Ezhov, Ivan; Peeken, Jan C; Combs, Stephanie E; Menze, Bjoern H (2022). A unified 3D framework for Organs at Risk Localization and Segmentation for Radiation Therapy Planning. ArXiv.org 00624, Cornell University.
• Lipková, Jana; Menze, Bjoern; Wiestler, Benedikt; Koumoutsakos, Petros; Lowengrub, John S (2022). Modelling glioma progression, mass effect and intracranial pressure in patient anatomy. Journal of the Royal Society Interface, 19(188):20210922.
• Rühling, Sebastian; Navarro, Fernando; Sekuboyina, Anjany; El Husseini, Malek; Baum, Thomas; Menze, Bjoern; Braren, Rickmer; Zimmer, Claus; Kirschke, Jan S (2022). Automated detection of the contrast phase in MDCT by an artificial neural network improves the accuracy of opportunistic bone mineral density measurements. European Radiology, 32(3):1465-1474.
• Bayat, Amirhossein; Pace, Danielle F; Sekuboyina, Anjany; Payer, Christian; Stern, Darko; Urschler, Martin; Kirschke, Jan S; Menze, Bjoern H (2022). Anatomy-Aware Inference of the 3D Standing Spine Posture from 2D Radiographs. Tomography, 8(1):479-496.
• Paetzold, Johannes C; McGinnis, Julian; Shit, Suprosanna; Ezhov, Ivan; Büschl, Paul; Prabhakar, Chinmay; Todorov, Mihail I; Sekuboyina, Anjany; Kaissis, Georgios; Ertürk, Ali; Günnemann, Stephan; Menze, Bjoern (2022). Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph). ArXiv.org 2108.13233, Cornell University.
• Gafita, Andrei; Wang, Hui; Robertson, Andrew; Armstrong, Wesley R; Zaum, Raphael; Weber, Manuel; Yagubbayli, Farid; Kratochwil, Clemens; Grogan, Tristan R; Nguyen, Kathleen; Navarro, Fernando; Esfandiari, Rouzbeh; Rauscher, Isabel; Menze, Bjoern; Elashoff, David; Delpassand, Ebrahim S; Herrmann, Ken; Czernin, Johannes; Hofman, Michael S; Calais, Jeremie; Fendler, Wolfgang P; Eiber, Matthias (2022). Tumor Sink Effect in 68Ga-PSMA-11 PET: Myth or Reality?. Journal of Nuclear Medicine, 63(2):226-232.

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• Golbabaee, Mohammad; Buonincontri, Guido; Pirkl, Carolin M; Menzel, Marion I; Menze, Bjoern H; Davies, Mike; Gómez, Pedro A (2021). Compressive MRI quantification using convex spatiotemporal priors and deep encoder-decoder networks. Medical Image Analysis, 69:101945.
• Kofler, Florian; Ezhov, Ivan; Isensee, Fabian; Balsiger, Fabian; Berger, Christoph; Koerner, Maximilian; Paetzold, Johannes C; Li, Hongwei; Shit, Suprosanna; McKinley, Richard; Spyridon, Bakas; Zimmer, Claus; Ankerst, Donna; Kirschke, Jan S; Wiestler, Benedikt; Menze, Bjoern (2021). Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. ArXiv.org 2103.06205, Cornell University.
• Menze, Bjoern; Isensee, Fabian; Wiest, Roland; Wiestler, Bene; Maier-Hein, Klaus; Reyes, Mauricio; Bakas, Spyridon (2021). Analyzing magnetic resonance imaging data from glioma patients using deep learning. Computerized Medical Imaging and Graphics, 88:101828.
• El‐Rewaidy, Hossam; Fahmy, Ahmed S; Pashakhanloo, Farhad; Cai, Xiaoying; Kucukseymen, Selcuk; Csecs, Ibolya; Neisius, Ulf; Haji‐Valizadeh, Hassan; Menze, Bjoern; Nezafat, Reza (2021). Multi‐domain convolutional neural network (MD‐CNN) for radial reconstruction of dynamic cardiac MRI. Magnetic Resonance in Medicine, 85(3):1195-1208.
• Wennmann, Markus; Hielscher, Thomas; Kintzelé, Laurent; Menze, Bjoern H; Langs, Georg; Merz, Maximilian; Sauer, Sandra; Kauczor, Hans-Ulrich; Schlemmer, Heinz-Peter; Delorme, Stefan; Goldschmidt, Hartmut; Weinhold, Niels; Hillengass, Jens; Weber, Marc-André (2021). Analyzing Longitudinal wb-MRI Data and Clinical Course in a Cohort of Former Smoldering Multiple Myeloma Patients: Connections between MRI Findings and Clinical Progression Patterns. Cancers, 13(5):961.
• Dong, Xingchen; Li, Hongwei; Jiang, Zhutong; Grünleitner, Theresa; Güler, İnci; Dong, Jie; Wang, Kun; Köhler, Michael H; Jakobi, Martin; Menze, Bjoern H; Yetisen, Ali K; Sharp, Ian D; Stier, Andreas V; Finley, Jonathan J; Koch, Alexander W (2021). 3D Deep Learning Enables Accurate Layer Mapping of 2D Materials. ACS Nano, 15(2):3139-3151.
• Hu, Xiaobin; Zhao, Yu; Sekuboyina, Anjany; Menze, Bjoern (2021). Multi-Texture GAN: Exploring the Multi-Scale Texture Translation for Brain MR Images. ArXiv.org 2102.07225, Cornell University.
• Konrad, Sebastian F; Vanderlinden, Willem; Frederickx, Wout; Brouns, Tine; Menze, Björn H; De Feyter, Steven; Lipfert, Jan (2021). High-throughput AFM analysis reveals unwrapping pathways of H3 and CENP-A nucleosomes. Nanoscale, 13(10):5435-5447.
• Shit, Suprosanna; Das, Dhritiman; Ezhov, Ivan; Paetzold, Johannes C; Sanches, Augusto F; Thuerey, Nils; Menze, Bjoern H (2021). Velocity-To-Pressure (V2P) - Net: Inferring Relative Pressures from Time-Varying 3D Fluid Flow Velocities. In: Feragen, Aasa; Sommer, Stefan; Schnabel, J; Nielsen, Mads. Information Processing in Medical Imaging. Cham: Springer, 545-558.
• Li, Hongwei; Xue, Fei-Fei; Chaitanya, Krishna; Luo, Shengda; Ezhov, Ivan; Wiestler, Benedikt; Zhang, Jianguo; Menze, Bjoern (2021). Imbalance-Aware Self-supervised Learning for 3D Radiomic Representations. In: de Buijne, Marleen; Cotin, Stéphane; Speidel, Stefanie; Zhen, Yefeng; Essert, Caroline. Medical Immage Computing and Computer Assisted Intervention - MICCAI 2021. Strasbourg: Springer, 36-46.
• Ma, Jiechao; Li, Xiang; Li, Hongwei; Wang, Ruixuan; Menze, Bjoern; Zheng, Wei-Shi (2021). Cross-View Relation Networks for Mammogram Mass Detection. In: 2020 25th International Conference on Pattern Recognition (ICPR), Milan, Italy, 10 January 2021 - 15 January 2021. Institute of Electrical and Electronics Engineers, 8632-8638.
• Shit, Suprosanna; Ezhov, Ivan; Paetzold, Johannes C; Menze, Bjoern (2021). Aν-Net: Automatic Detection and Segmentation of Aneurysm. In: Hennemuth, A. Cerebral Aneurysm Detection and Analysis. Cham: Springer, 51-57.

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