Bernd Bodenmiller

ZORA Publication List

Publications

• Wagner, Johanna; Rapsomaniki, Maria Anna; Chevrier, Stéphane; Anzeneder, Tobias; Langwieder, Claus; Dykgers, August; Rees, Martin; Ramaswamy, Annette; Muenst, Simone; Soysal, Savas Deniz; Jacobs, Andrea; Windhager, Jonas; Silina, Karina; van den Broek, Maries; Dedes, Konstantin Johannes; Rodríguez Martínez, Maria; Weber, Walter Paul; Bodenmiller, Bernd (2019). A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer. Cell, 177(5):1330-1345.
• Damond, Nicolas; Engler, Stefanie; Zanotelli, Vito R T; Schapiro, Denis; Wasserfall, Clive H; Kusmartseva, Irina; Nick, Harry S; Thorel, Fabrizio; Herrera, Pedro L; Atkinson, Mark A; Bodenmiller, Bernd (2019). A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry. Cell Metabolism, 29(3):755-768.e5.
• Krishnaswamy, Smita; Zivanovic, Nevena; Sharma, Roshan; Pe'er, Dana; Bodenmiller, Bernd (2018). Learning time-varying information flow from single-cell epithelial to mesenchymal transition data. PLoS ONE, 13(10):e0203389.
• Kündig, Pascale; Giesen, Charlotte; Jackson, Hartland; Bodenmiller, Bernd; Papassotirolopus, Bärbel; Freiberger, Sandra Nicole; Aquino, Catharine; Opitz, Lennart; Varga, Zsuzsanna (2018). Correction to: Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer. Journal of Translational Medicine, 16(1):180.
• Kündig, Pascale; Giesen, Charlotte; Jackson, Hartland; Bodenmiller, Bernd; Papassotirolopus, Bärbel; Freiberger, Sandra Nicole; Aquino, Catharine; Opitz, Lennart; Varga, Zsuzsanna (2018). Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer. Journal of Translational Medicine, 16:118.
• Chevrier, Stéphane; Crowell, Helena L; Zanotelli, Vito R T; Engler, Stefanie; Robinson, Mark D; Bodenmiller, Bernd (2018). Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry. Cell Systems, 6(5):612-620.e5.
• Catena, Raúl; Montuenga, Luis M; Bodenmiller, Bernd (2018). Ruthenium counterstaining for imaging mass cytometry. Journal of Pathology, 244(4):479-484.
• Pelissier Vatter, Fanny A; Schapiro, Denis; Chang, Hang; Borowsky, Alexander D; Lee, Jonathan K; Parvin, Bahram; Stampfer, Martha R; LaBarge, Mark A; Bodenmiller, Bernd; Lorens, James B (2018). High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia. Cell Reports, 23(4):1205-1219.
• Schulz, Daniel; Zanotelli, Vito R T; Fischer, Jana Raja; Schapiro, Denis; Engler, Stefanie; Lun, Xiao-Kang; Jackson, Hartland Warren; Bodenmiller, Bernd (2018). Correction: Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry. Cell Systems, 6(4):531.
• Arnol, Damien; Schapiro, Denis; Bodenmiller, Bernd; Saez-Rodriguez, Julio; Stegle, Oliver (2018). Modelling cell-cell interactions from spatial molecular data with spatial variance component analysis. bioRxiv 265256v3, Cold Spring Harbor Laboratory.
• Rapsomaniki, Maria Anna; Lun, Xiao-Kang; Woerner, Stefan; Laumanns, Marco; Bodenmiller, Bernd; Martínez, María Rodríguez (2018). CellCycleTRACER accounts for cell cycle and volume in mass cytometry data. Nature Communications, 9(1):632.
• Schulz, Daniel; Zanotelli, Vito R T; Fischer, Jana Raja; Schapiro, Denis; Engler, Stefanie; Lun, Xiao-Kang; Jackson, Hartland Warren; Bodenmiller, Bernd (2018). Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry. Cell Systems, 6(1):25-36.e5.
• Regev, Aviv; Teichmann, Sarah A; Lander, Eric S; Amit, Ido; Benoist, Christophe; Birney, Ewan; Bodenmiller, Bernd; et al (2017). The Human Cell Atlas. eLife, 6:e27041.
• Schapiro, Denis; Jackson, Hartland W; Raghuraman, Swetha; Fischer, Jana R; Zanotelli, Vito R T; Schulz, Daniel; Giesen, Charlotte; Catena, Raúl; Varga, Zsuzsanna; Bodenmiller, Bernd (2017). histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data. Nature Methods:8.
• Chevrier, Stéphane; Levine, Jacob Harrison; Zanotelli, Vito R T; Silina, Karina; Schulz, Daniel; Bacac, Marina; Ries, Carola Hermine; Ailles, Laurie; Jewett, Michael Alexander Spencer; Moch, Holger; van den Broek, Maries; Beisel, Christian; Stadler, Michael Beda; Gedye, Craig; Reis, Bernhard; Pe'er, Dana; Bodenmiller, Bernd (2017). An Immune Atlas of Clear Cell Renal Cell Carcinoma. Cell, 169(4):736-749.e18.
• Lun, Xiao-Kang; Zanotelli, Vito R T; Wade, James D; Schapiro, Denis; Tognetti, Marco; Dobberstein, Nadine; Bodenmiller, Bernd (2017). Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry. Nature Biotechnology, 35(2):164-172.
• Malmersjö, Seth; Di Palma, Serena; Diao, Jiajie; Lai, Ying; Pfuetzner, Richard A; Wang, Austin L; McMahon, Moira A; Hayer, Arnold; Porteus, Matthew; Bodenmiller, Bernd; Brunger, Axel T; Meyer, Tobias (2016). Phosphorylation of residues inside the SNARE complex suppresses secretory vesicle fusion. The EMBO Journal, 35(16):1810-1821.
• Catena, Raúl; Özcan, Alaz; Zivanovic, Nevena; Bodenmiller, Bernd (2016). Enhanced multiplexing in mass cytometry using osmium and ruthenium tetroxide species. Cytometry. Part A, 89(5):491-497.
• Bodenmiller, Bernd (2016). Multiplexed epitope-based tissue imaging for discovery and healthcare applications. Cell Systems, 2(4):225-238.
• Catena, Raúl; Özcan, Alaz; Jacobs, Andrea; Chevrier, Stephane; Bodenmiller, Bernd (2016). AirLab: a cloud-based platform to manage and share antibody-based single-cell research. Genome Biology, 17(1):142.

Pagination